Kicking Thaumcraft API out into submodule. You'll have to update submodules to build from now on. (Easier than trying to keep a damned jar up to date manually)

Brushing up build.gradle and creating gradle.properties to manage mod version & version dependencies.
Disabling mod version check for now - Dropbox file has been inaccessible for the better part of a year. (Thanks, dropbox.)
Nuking build version in VersionInfo.java - not used for anything; not useful.

src/main/java/magicbees/main/MagicBees.java

@@ -78,7 +78,8 @@ public class MagicBees
 		CraftingManager.setupCrafting();
 		CraftingManager.registerLiquidContainers();
 
-		VersionInfo.doVersionCheck();
+		// Version check file is MIA.
+		//VersionInfo.doVersionCheck();
 		LogHelper.info("Postinit completed");
 	}
 

src/main/java/magicbees/main/utils/VersionInfo.java

@@ -18,7 +18,6 @@ public class VersionInfo
 {
 	public static final String ModName = "MagicBees";
 	public static final String Version = "@VERSION@";
-	public static final String Build = "@BUILD_NUMBER@";
 	public static final String MCVersion = "@MCVERSION@";
 	public static final String VersionURL = "http://bit.ly/magicbeesVersionInfo";
 	public static final String GUI_FACTORY_CLASS = "magicbees.client.gui.GuiFactory";